CNB-CSIC | BioinfoGP | Tools
Researcher's
DIGEST
CONVERT LIST OF GENES INTO FUNCTIONAL
CLUSTERS BY USING TEXT-MINING TECHNIQUES
Please cite:
Triviño, J.C., Sánchez-Ferrero, J.C. & Oliveros, J.C. (2007). Researcher's DIGEST. Using text-mining techniques for classifying list of genes. Critical Assessment of Microarray Databases (CAMDA07). (pdf1) (pdf2)
 
Paste a table of up to 1000 gene IDs and descriptions. Separate columns by tabs (Example 1).
Optional: include logRatio values to see the gene expression patterns (Example 2). IMPORTANT: all logRatio values MUST be valid numbers. Null or empty cells are not yet allowed.

Examples correspond to the 100 most variable gene expression patterns from:
 
"Simons V, Morrissey JP, Latijnhouwers M, Csukai M et al. Dual effects of plant steroidal alkaloids on Saccharomyces cerevisiae. Antimicrob Agents Chemother 2006 Aug;50(8):2732-40."
 
All data were downloaded from Gene Expression Omnibus database: GDS2196

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